Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
Bipolar spindle neurons
NA
NA

Attributes by original data submitter

Sample

age
53 year
donor ID
ENCDO336AAA
dev stage
adult
sample type
in vitro differentiated cells
cell type
bipolar spindle neuron
sex
male
lab
Thomas Gingeras, CSHL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
31675146
Reads aligned (%)
94.1
Duplicates removed (%)
20.4
Number of peaks
59896 (qval < 1E-05)

hg19

Number of total reads
31675146
Reads aligned (%)
93.8
Duplicates removed (%)
20.7
Number of peaks
59684 (qval < 1E-05)

Base call quality data from DBCLS SRA